From f6165c61c3d4e4b07efe01cd1ac836330b577766 Mon Sep 17 00:00:00 2001
From: Yannick <djoumbou@ualberta.ca>
Date: Thu, 5 Feb 2015 13:14:53 -0700
Subject: [PATCH] updated the classyfire api. you can get query or entity in
 the sdf format now.

---
 lib/classyfire_api.rb | 38 ++++++++++++++++++++++++++++++--------
 1 file changed, 30 insertions(+), 8 deletions(-)

diff --git a/lib/classyfire_api.rb b/lib/classyfire_api.rb
index b3ed247..9297b78 100644
--- a/lib/classyfire_api.rb
+++ b/lib/classyfire_api.rb
@@ -11,28 +11,51 @@ module ClassyFireAPI
       e.response
     rescue  RestClient::InternalServerError => e
       e.response
+    rescue RestClient::GatewayTimeout => e
+      e.response
+    rescue RestClient::RequestTimeout => e
+      e.response
     end
   end
 
-  def ClassyFireAPI.get_query(query_id)
+  def ClassyFireAPI.get_query(query_id,format="json")
+    # format can be either 'json' or 'sdf'
     begin
-      puts "#{URL}/queries/#{query_id}.json"
-      RestClient.get "#{URL}/queries/#{query_id}.json", :accept => :json
+      if format == "json"
+        puts "#{URL}/queries/#{query_id}.json"
+        RestClient.get "#{URL}/queries/#{query_id}.json", :accept => :json
+      elsif format == "sdf"
+        puts "#{URL}/queries/#{query_id}.sdf"
+        RestClient.get "#{URL}/queries/#{query_id}.sdf", :accept => :sdf
+      end
     rescue RestClient::ResourceNotFound => e
       e.response
     rescue  RestClient::InternalServerError => e
       e.response
+    rescue RestClient::GatewayTimeout => e
+      e.response
+    rescue RestClient::RequestTimeout => e
+      e.response
     end      
   end
 
-  def ClassyFireAPI.get_entity_classification(inchikey)
+  def ClassyFireAPI.get_entity_classification(inchikey,format="json")
+    # format can be either 'json' or 'sdf'
     inchikey_id = inchikey.to_s.gsub('InChIKey=','')
     begin
-      RestClient.get "#{URL}/entities/#{inchikey_id}.json", :accept => :json
+      if format == "json"
+        RestClient.get "#{URL}/entities/#{inchikey_id}.#{format}", :accept => :json
+      elsif format == "sdf"
+        RestClient.get "#{URL}/entities/#{inchikey_id}.#{format}", :accept => :sdf
+      end 
     rescue RestClient::ResourceNotFound => e
       e.response
     rescue  RestClient::InternalServerError => e
       e.response
+    rescue RestClient::GatewayTimeout => e
+      e.response
+    rescue RestClient::RequestTimeout => e
+      e.response
     end
   end
 
@@ -40,9 +63,8 @@ module ClassyFireAPI
     s = JSON.parse(get_query(query_id))
     if s['error']
       s
-    elsif s['state']
-
-      s['state']
+    elsif s['classification_status:']
+      s['classification_status']
     end
   end
 end
\ No newline at end of file