Bug fixes. Update timing intervals. Improve output.

lib/classyfire_api.rb

@@ -156,9 +156,8 @@ module ClassyFireAPI
     f             = File.open(absolute_path, 'r')
     input         = []
 
-
     lines = File.readlines(absolute_path)
-    puts lines.length, lines[0]
+
     i = 0
     lines.uniq.each do |line|
       i += 1
@@ -181,19 +180,19 @@ module ClassyFireAPI
     i = start
 
     if i < initial_nr_of_jobs
-      while i <  initial_nr_of_jobs
+      while i <=  initial_nr_of_jobs
 
-        title = File.basename(absolute_path).split(".")[0] + "_yannick" + "_part_#{i}"
+        title = File.basename(absolute_path).split(".")[0] + "_part_#{i}"
 
         if i <= subdivised_groups.length
-          puts "\n\n\n\n---------------------- -----------"
+          puts "\n---------------------------------"
           begin
             puts "submitting #{title}"
             # puts subdivised_groups[i-1].join("\n")
             q       = submit_query(title,subdivised_groups[i-1].join("\n"),type)
-            puts JSON.parse(q)['id']
+            puts "Query ID: " + JSON.parse(q)['id'].to_s
             query_ids << JSON.parse(q)['id']
-            sleep(10)
+            sleep(20)
           rescue Exception => e
             puts e.message
             puts e.backtrace.inspect
@@ -202,38 +201,36 @@ module ClassyFireAPI
         else
           break
         end
-        query_ids
       end
       puts "Going to sleep at #{Time.now - @start_time} for #{sleeping_time} s."
       sleep(sleeping_time)
       puts "Waking up at #{Time.now - @start_time}"
     end
 
-
-
     while i >= initial_nr_of_jobs && i < subdivised_groups.length
       k = 0
       for k in (i...(i + initial_nr_of_jobs))
-        title     = File.basename(absolute_path).split(".")[0] + "_yannick" + "_part_#{k}"
-
+        title     = File.basename(absolute_path).split(".")[0] + "_part_#{k}"
         begin
           puts "submitting #{title}"
           q = submit_query(title,subdivised_groups[k-1].join("\n"),type)
-          puts JSON.parse(q)['id']
+          puts "Query ID: " + JSON.parse(q)['id'].to_s
           query_ids << JSON.parse(q)['id']
-          sleep(10)
+          sleep(20)
         rescue Exception => e
           puts e.message
           puts e.backtrace.inspect
         end
         i = i + 1
       end
-      i = k
-      puts "Going to sleep at #{Time.now - @start_time} for #{sleeping_time} s."
-      sleep(sleeping_time)
-      puts "Waking up at #{Time.now - @start_time}"
+      if i >= initial_nr_of_jobs && i < subdivised_groups.length
+        puts "Going to sleep at #{Time.now - @start_time} for #{sleeping_time} s."
+        sleep(sleeping_time)
+        puts "Waking up at #{Time.now - @start_time}"
+      end
     end
 
+    puts "Done at #{Time.now - @start_time}"
   end
 
   # Takes each file in a folder, and submit the contained structures in bluks of a given size.