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Curie-Web
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added os.system call

This commit is contained in:
Navan Chauhan 2020-08-30 22:49:17 +05:30
parent 422a7b2e72
commit be76912df2
1 changed files with 2 additions and 1 deletions
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app/dock-single.py
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@ -97,7 +97,7 @@ def get3DModel(protein,ligand):
cmd = session.cmd cmd = session.cmd
cmd.load(protein,"target") cmd.load(protein,"target")
cmd.load(ligand,"ligand") cmd.load(ligand,"ligand")
cmd.save("model.gltf") cmd.save("model.dae")
session.stop() session.stop()
def removeWater(pdbpath): def removeWater(pdbpath):
@ -242,6 +242,7 @@ with tempfile.TemporaryDirectory() as directory:
make_archive(zi, 'zip', directory) make_archive(zi, 'zip', directory)
copyfile("report.pdf",os.path.join(reportDirectory,(str(jobID)+".pdf"))) copyfile("report.pdf",os.path.join(reportDirectory,(str(jobID)+".pdf")))
get3DModel(pdbpath,"%s_out.pdbqt"%(records[4])) get3DModel(pdbpath,"%s_out.pdbqt"%(records[4]))
os.system("collada2gltf -i model.dae -o model.gltf")
copyfile("model.gltf",os.path.join(modelDirectory,(str(jobID)+".gltf"))) copyfile("model.gltf",os.path.join(modelDirectory,(str(jobID)+".gltf")))
os.system("docker run -it --rm -v $(PWD):/usr/app leon/usd-from-gltf:latest model.gltf model.usdz") os.system("docker run -it --rm -v $(PWD):/usr/app leon/usd-from-gltf:latest model.gltf model.usdz")
copyfile("model.usdz",os.path.join(modelDirectory,(str(jobID)+".usdz"))) copyfile("model.usdz",os.path.join(modelDirectory,(str(jobID)+".usdz")))