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Curie-Web
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added failed to connect to db error

This commit is contained in:
Navan Chauhan 2020-09-19 16:01:49 +05:30
parent d102cf38a1
commit 92b2da20a1
2 changed files with 20 additions and 9 deletions
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1
app/misc.ini
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@ -7,6 +7,7 @@ OD03 = Failed to write the converted PDBQT file
PL02 = Failed to import PLIP, please ensure that you have correctly installed PLIP PL02 = Failed to import PLIP, please ensure that you have correctly installed PLIP
PL01 = Failed to fetch the PDB, please check the PDB Code PL01 = Failed to fetch the PDB, please check the PDB Code
DB00 = Failed to connect to the database.
DB01 = This Job ID does not exist 😠. If you think this is an error, please contact us. DB01 = This Job ID does not exist 😠. If you think this is an error, please contact us.
CW01 = Looks like an invalid PDB ID CW01 = Looks like an invalid PDB ID

28
app/views.py
View File

@ -14,6 +14,9 @@ from datetime import datetime,date
import json import json
import subprocess import subprocess
import mysql.connector as con
from mysql.connector.errors import InterfaceError
import requests import requests
import logging import logging
@ -123,9 +126,12 @@ def status():
if request.method == 'POST': if request.method == 'POST':
if taskStatusForm.validate_on_submit(): if taskStatusForm.validate_on_submit():
jobID = taskStatusForm.jobID.data jobID = taskStatusForm.jobID.data
import mysql.connector as con
mycon = con.connect(host=app.config['DB_HOST'],user=app.config['DB_USER'],password=app.config['DB_PASSWORD'],port=app.config['DB_PORT'],database=app.config['DB_NAME']) try:
mycursor = mycon.cursor() mycon = con.connect(host=app.config['DB_HOST'],user=app.config['DB_USER'],password=app.config['DB_PASSWORD'],port=app.config['DB_PORT'],database=app.config['DB_NAME'])
mycursor = mycon.cursor()
except InterfaceError:
return render_template('error.html',code="DB00",description=errors['DB00'])
sqlQuery = 'select id, protein_name, ligand_name, date, description, done, pdb from curieweb where id="%s"' % (jobID) sqlQuery = 'select id, protein_name, ligand_name, date, description, done, pdb from curieweb where id="%s"' % (jobID)
mycursor.execute(sqlQuery) mycursor.execute(sqlQuery)
records = mycursor.fetchall() records = mycursor.fetchall()
@ -286,9 +292,11 @@ def dock_manual():
sx,sy,sz = str(form.size_x.data), str(form.size_y.data), str(form.size_z.data) sx,sy,sz = str(form.size_x.data), str(form.size_y.data), str(form.size_z.data)
email = form.email.data email = form.email.data
import mysql.connector as con try:
mycon = con.connect(host=app.config['DB_HOST'],user=app.config['DB_USER'],password=app.config['DB_PASSWORD'],port=app.config['DB_PORT'],database=app.config['DB_NAME']) mycon = con.connect(host=app.config['DB_HOST'],user=app.config['DB_USER'],password=app.config['DB_PASSWORD'],port=app.config['DB_PORT'],database=app.config['DB_NAME'])
mycursor = mycon.cursor() mycursor = mycon.cursor()
except InterfaceError:
return render_template("error.html",code="DB00",description=errors['DB00'])
import tempfile import tempfile
with tempfile.TemporaryDirectory() as directory: with tempfile.TemporaryDirectory() as directory:
@ -334,9 +342,11 @@ def dock_automatic():
if len(pdb) != 4: if len(pdb) != 4:
return render_template("error.html",code="CW01",description=errors['CW01']) return render_template("error.html",code="CW01",description=errors['CW01'])
import mysql.connector as con try:
mycon = con.connect(host=app.config['DB_HOST'],user=app.config['DB_USER'],password=app.config['DB_PASSWORD'],port=app.config['DB_PORT'],database=app.config['DB_NAME']) mycon = con.connect(host=app.config['DB_HOST'],user=app.config['DB_USER'],password=app.config['DB_PASSWORD'],port=app.config['DB_PORT'],database=app.config['DB_NAME'])
mycursor = mycon.cursor() mycursor = mycon.cursor()
except InterfaceError:
return render_template('error.html',code="DB00",description=errors['DB00'])
sqlQuery = "insert into curieweb (id, email, pdb, ligand_smile, ligand_name, date, description) values (%s,%s,%s,%s,%s,CURDATE(),%s) " sqlQuery = "insert into curieweb (id, email, pdb, ligand_smile, ligand_name, date, description) values (%s,%s,%s,%s,%s,CURDATE(),%s) "
jobID = gen_word(16, 1, 1) jobID = gen_word(16, 1, 1)