added exception handling for unknown hostname
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parent
a3e3511e3b
commit
0ff2f3189e
5
api.py
5
api.py
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@ -19,13 +19,16 @@ def gen_word(N, min_N_dig, min_N_low):
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dbFailing = False
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dbFailing = False
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import mysql.connector as con
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import mysql.connector as con
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from mysql.connector.errors import InterfaceError
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from mysql.connector.errors import InterfaceError, DatabaseError
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try:
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try:
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mycon = con.connect(host=flask_app.config['DB_HOST'],user=flask_app.config['DB_USER'],password=flask_app.config['DB_PASSWORD'],port=flask_app.config['DB_PORT'],database=flask_app.config['DB_NAME'])
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mycon = con.connect(host=flask_app.config['DB_HOST'],user=flask_app.config['DB_USER'],password=flask_app.config['DB_PASSWORD'],port=flask_app.config['DB_PORT'],database=flask_app.config['DB_NAME'])
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mycursor = mycon.cursor()
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mycursor = mycon.cursor()
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except InterfaceError:
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except InterfaceError:
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print("Could not connect to the database!")
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print("Could not connect to the database!")
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dbFailing = True
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dbFailing = True
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except DatabaseError:
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print("Unknown Host")
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dbFailing = True
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"""
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"""
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@flask_app.route("/")
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@flask_app.route("/")
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@ -9,6 +9,7 @@ PL01 = Failed to fetch the PDB, please check the PDB Code
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DB00 = Failed to connect to the database.
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DB00 = Failed to connect to the database.
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DB01 = This Job ID does not exist 😠. If you think this is an error, please contact us.
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DB01 = This Job ID does not exist 😠. If you think this is an error, please contact us.
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DB02 = Unknown Hostname, failed to connect to the database.
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CW01 = Looks like an invalid PDB ID
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CW01 = Looks like an invalid PDB ID
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@ -15,7 +15,7 @@ import json
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import subprocess
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import subprocess
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import mysql.connector as con
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import mysql.connector as con
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from mysql.connector.errors import InterfaceError
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from mysql.connector.errors import InterfaceError,DatabaseError
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import requests
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import requests
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@ -134,6 +134,8 @@ def status():
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mycursor = mycon.cursor()
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mycursor = mycon.cursor()
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except InterfaceError:
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except InterfaceError:
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return render_template('error.html',code="DB00",description=errors['DB00'])
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return render_template('error.html',code="DB00",description=errors['DB00'])
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except DatabaseError:
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return render_template('error.html',code="DB02",description=errors['DB02'])
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sqlQuery = 'select id, protein_name, ligand_name, date, description, done, pdb from curieweb where id="%s"' % (jobID)
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sqlQuery = 'select id, protein_name, ligand_name, date, description, done, pdb from curieweb where id="%s"' % (jobID)
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mycursor.execute(sqlQuery)
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mycursor.execute(sqlQuery)
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records = mycursor.fetchall()
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records = mycursor.fetchall()
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@ -309,6 +311,8 @@ def dock_manual():
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mycursor = mycon.cursor()
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mycursor = mycon.cursor()
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except InterfaceError:
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except InterfaceError:
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return render_template("error.html",code="DB00",description=errors['DB00'])
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return render_template("error.html",code="DB00",description=errors['DB00'])
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except DatabaseError:
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return render_template("error.html",code="DB02",description=errors['DB02'])
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import tempfile
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import tempfile
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with tempfile.TemporaryDirectory() as directory:
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with tempfile.TemporaryDirectory() as directory:
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@ -361,6 +365,8 @@ def dock_automatic():
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mycursor = mycon.cursor()
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mycursor = mycon.cursor()
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except InterfaceError:
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except InterfaceError:
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return render_template('error.html',code="DB00",description=errors['DB00'])
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return render_template('error.html',code="DB00",description=errors['DB00'])
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except DatabaseError:
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return render_template("error.html",code="DB02",description=errors['DB02'])
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sqlQuery = "insert into curieweb (id, email, pdb, ligand_smile, ligand_name, date, description) values (%s,%s,%s,%s,%s,CURDATE(),%s) "
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sqlQuery = "insert into curieweb (id, email, pdb, ligand_smile, ligand_name, date, description) values (%s,%s,%s,%s,%s,CURDATE(),%s) "
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jobID = gen_word(16, 1, 1)
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jobID = gen_word(16, 1, 1)
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